This repository is a curated, comprehensive list of academic papers on the application of deep learning to protein design. It is not a software application or a data pipeline; rather, it is a living bibliography organized by research area (e.g., inverse folding, diffusion-based design, language models, antibody design). The README.md file contains hundreds of paper entries with links to publications, code repositories, and supplementary materials, updated frequently (last update shown as 2026.08.02). There is no executable code, no datasets, and no computational workflows. The value lies in its role as a reference index for researchers and practitioners tracking the rapidly evolving field of AI-driven protein design.